Molecular Docking
Pubrica’s provide our researchers for Bioinformatics services & analysis service also include drug development, Molecular Docking, Process of modeling development, Phylogenetic analysis, Molecular format conversion and Protein structure visualization of the relevant information in a given area. Our team protects your private confidentiality of research.
The goal of molecular docking approaches is to anticipate a ligands optimum binding mode to a macromolecular partner (here, just proteins are considered). It entails creating various potential ligand conformations/orientations, or poses, within the protein binding site. As a result, accessibility to the molecule targets three-dimensional structure is a must; it can be an empirically solved structure (such as through X-ray crystallography) or a structure generated by computational techniques.
The two significant steps of molecular docking are an engine for sampling conformations and orientations and assigning a score to each expected positions scoring function. The sampling procedure should examine the conformational space given by the free energy landscape, where the scoring process in docking approximates energy. The scoring function should be able to correlate the native bound-conformation to the energy hyper surfaces global minimum.
Our comprehensive Bioinformatics Software services
Types of Bioinformatics: We undertake different types of Molecular Docking for Protein-Ligand docking, Protein-Protein docking and Enzyme-Ligand docking for your particular software work.
Wide range of Sources: NCBI, BLAST, Pubmed, Pubmed Nucleotide, Pubmed Protein, Pubmed Gene, Pubmed Sequence.
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Frequently asked questions
We are with you the whole nine yards. In this section, we answer the tough questions. For any information, contact us via +91-9884350006 meanwhile, here are some of those queries
To predict the secondary and tertiary structure of a protein molecule, a variety of software is available. E.g. Autodock is a suite of automated docking studies; it was mainly used to analyze the molecular docking of target protein and ligand.
Our service fees are determined by the requirements that are submitted to us. If you want to learn more about it, go through https://pubrica.com/services/bioinformatics/. We'll contact you as soon as possible.
Bioinformatics analysis speeds up drug target identification and candidate screening and refining, but it can also help characterize adverse effects and anticipate drug resistance.
Sequence similarity searches, multiple sequence alignments, domain identification and characterization, secondary structure prediction, solvent accessibility prediction, automatic protein fold recognition, three-dimensional model construction to atomic detail, and model validation can all be used to predict protein structure using bioinformatics.
RasMol is a molecular graphics tool that allows you to see proteins, nucleic acids, and small molecules in 3D structure 2D structure visualization. It shows the ball and stick model, molecular surface, ribbon model etc.
